Cancer-miRNA Regulatory Network

Compendium of miRNA Target Genes

Download FIRM

Citation

Genes Targeted by hsa-mir-548l in SRS Ovarian Hendrix Cluster 55 Table contains all genes in the SRS Ovarian Hendrix cluster number 55. If a gene harbors a predicted miRNA binding site by one of the three inference methods it is displayed in the final column: M = Weeder-miRvestigator predicted site, P = PITA predicted site and T = TargetScan predicted site. Entrez ID Symbol Description hsa-mir-548l 8100 IFT88 intraflagellar transport 88 homolog (Chlamydomonas) [Source:HGNC Symbol;Acc:20606] T 54585 LZTFL1 leucine zipper transcription factor-like 1 [Source:HGNC Symbol;Acc:6741] zzz999 4692 NDN necdin homolog (mouse) [Source:HGNC Symbol;Acc:7675] T 1843 DUSP1 dual specificity phosphatase 1 [Source:HGNC Symbol;Acc:3064] zzz999 9590 AKAP12 A kinase (PRKA) anchor protein 12 [Source:HGNC Symbol;Acc:370] zzz999 26575 RGS17 regulator of G-protein signaling 17 [Source:HGNC Symbol;Acc:14088] zzz999 80210 ARMC9 armadillo repeat containing 9 [Source:HGNC Symbol;Acc:20730] zzz999 65117 RSRC2 arginine/serine-rich coiled-coil 2 [Source:HGNC Symbol;Acc:30559] zzz999 6383 SDC2 syndecan 2 [Source:HGNC Symbol;Acc:10659] T 10788 IQGAP2 IQ motif containing GTPase activating protein 2 [Source:HGNC Symbol;Acc:6111] zzz999 22836 RHOBTB3 Rho-related BTB domain containing 3 [Source:HGNC Symbol;Acc:18757] T 56895 AGPAT4 1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta) [Source:HGNC Symbol;Acc:20885] T 28986 MAGEH1 melanoma antigen family H, 1 [Source:HGNC Symbol;Acc:24092] zzz999 23414 ZFPM2 zinc finger protein, multitype 2 [Source:HGNC Symbol;Acc:16700] P T 55799 CACNA2D3 calcium channel, voltage-dependent, alpha 2/delta subunit 3 [Source:HGNC Symbol;Acc:15460] zzz999 26960 NBEA neurobeachin [Source:HGNC Symbol;Acc:7648] P T 2941 GSTA4 glutathione S-transferase alpha 4 [Source:HGNC Symbol;Acc:4629] zzz999 54816 ZNF280D zinc finger protein 280D [Source:HGNC Symbol;Acc:25953] zzz999 10209 EIF1 eukaryotic translation initiation factor 1 [Source:HGNC Symbol;Acc:3249] zzz999 23041 MON2 MON2 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:29177] T 8460 TPST1 tyrosylprotein sulfotransferase 1 [Source:HGNC Symbol;Acc:12020] zzz999 7474 WNT5A wingless-type MMTV integration site family, member 5A [Source:HGNC Symbol;Acc:12784] P T 51309 ARMCX1 armadillo repeat containing, X-linked 1 [Source:HGNC Symbol;Acc:18073] zzz999 8013 NR4A3 nuclear receptor subfamily 4, group A, member 3 [Source:HGNC Symbol;Acc:7982] P T 8976 WASL Wiskott-Aldrich syndrome-like [Source:HGNC Symbol;Acc:12735] T 6428 SRSF3 serine/arginine-rich splicing factor 3 [Source:HGNC Symbol;Acc:10785] T 80303 EFHD1 EF-hand domain family, member D1 [Source:HGNC Symbol;Acc:29556] zzz999 60468 BACH2 BTB and CNC homology 1, basic leucine zipper transcription factor 2 [Source:HGNC Symbol;Acc:14078] P T 7485 WRB tryptophan rich basic protein [Source:HGNC Symbol;Acc:12790] zzz999 27087 B3GAT1 beta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P) [Source:HGNC Symbol;Acc:921] zzz999 23362 PSD3 pleckstrin and Sec7 domain containing 3 [Source:HGNC Symbol;Acc:19093] T 3040 HBA1 hemoglobin, alpha 1 [Source:HGNC Symbol;Acc:4823] zzz999 3043 HBB hemoglobin, beta [Source:HGNC Symbol;Acc:4827] zzz999 1960 EGR3 early growth response 3 [Source:HGNC Symbol;Acc:3240] P T 7216 TRO trophinin [Source:HGNC Symbol;Acc:12326] zzz999 3491 CYR61 cysteine-rich, angiogenic inducer, 61 [Source:HGNC Symbol;Acc:2654] P T 2354 FOSB FBJ murine osteosarcoma viral oncogene homolog B [Source:HGNC Symbol;Acc:3797] zzz999 1203 CLN5 ceroid-lipofuscinosis, neuronal 5 [Source:HGNC Symbol;Acc:2076] zzz999 23272 C3orf63 chromosome 3 open reading frame 63 [Source:HGNC Symbol;Acc:30314] zzz999 443 ASPA aspartoacylase [Source:HGNC Symbol;Acc:756] zzz999 11337 GABARAP GABA(A) receptor-associated protein [Source:HGNC Symbol;Acc:4067] zzz999 51265 CDKL3 cyclin-dependent kinase-like 3 [Source:HGNC Symbol;Acc:15483] zzz999 29896 TRA2A transformer 2 alpha homolog (Drosophila) [Source:HGNC Symbol;Acc:16645] zzz999 10181 RBM5 RNA binding motif protein 5 [Source:HGNC Symbol;Acc:9902] zzz999 8417 STX7 syntaxin 7 [Source:HGNC Symbol;Acc:11442] T 26112 CCDC69 coiled-coil domain containing 69 [Source:HGNC Symbol;Acc:24487] zzz999 9732 DOCK4 dedicator of cytokinesis 4 [Source:HGNC Symbol;Acc:19192] P T 23229 ARHGEF9 Cdc42 guanine nucleotide exchange factor (GEF) 9 [Source:HGNC Symbol;Acc:14561] zzz999 54839 LRRC49 leucine rich repeat containing 49 [Source:HGNC Symbol;Acc:25965] zzz999 1793 DOCK1 dedicator of cytokinesis 1 [Source:HGNC Symbol;Acc:2987] zzz999 55002 TMCO3 transmembrane and coiled-coil domains 3 [Source:HGNC Symbol;Acc:20329] zzz999 6594 SMARCA1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 [Source:HGNC Symbol;Acc:11097] P T 8462 KLF11 Kruppel-like factor 11 [Source:HGNC Symbol;Acc:11811] T 81631 MAP1LC3B microtubule-associated protein 1 light chain 3 beta [Source:HGNC Symbol;Acc:13352] P T 11188 NISCH nischarin [Source:HGNC Symbol;Acc:18006] zzz999 79070 KDELC1 KDEL (Lys-Asp-Glu-Leu) containing 1 [Source:HGNC Symbol;Acc:19350] T 3164 NR4A1 nuclear receptor subfamily 4, group A, member 1 [Source:HGNC Symbol;Acc:7980] zzz999 23064 SETX senataxin [Source:HGNC Symbol;Acc:445] T 56603 CYP26B1 cytochrome P450, family 26, subfamily B, polypeptide 1 [Source:HGNC Symbol;Acc:20581] zzz999 8425 LTBP4 latent transforming growth factor beta binding protein 4 [Source:HGNC Symbol;Acc:6717] zzz999 29994 BAZ2B bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:963] zzz999 5463 POU6F1 POU class 6 homeobox 1 [Source:HGNC Symbol;Acc:9224] zzz999 4958 OMD osteomodulin [Source:HGNC Symbol;Acc:8134] zzz999 9958 USP15 ubiquitin specific peptidase 15 [Source:HGNC Symbol;Acc:12613] zzz999 1958 EGR1 early growth response 1 [Source:HGNC Symbol;Acc:3238] zzz999 1959 EGR2 early growth response 2 [Source:HGNC Symbol;Acc:3239] P T 284 ANGPT1 angiopoietin 1 [Source:HGNC Symbol;Acc:484] T 23392 KIAA0368 KIAA0368 [Source:HGNC Symbol;Acc:29020] T 8777 MPDZ multiple PDZ domain protein [Source:HGNC Symbol;Acc:7208] zzz999 10004 NAALADL1 N-acetylated alpha-linked acidic dipeptidase-like 1 [Source:HGNC Symbol;Acc:23536] zzz999 11142 PKIG protein kinase (cAMP-dependent, catalytic) inhibitor gamma [Source:HGNC Symbol;Acc:9019] zzz999 10260 DENND4A DENN/MADD domain containing 4A [Source:HGNC Symbol;Acc:24321] zzz999 54796 BNC2 basonuclin 2 [Source:HGNC Symbol;Acc:30988] zzz999 6608 SMO smoothened homolog (Drosophila) [Source:HGNC Symbol;Acc:11119] zzz999 388 RHOB ras homolog gene family, member B [Source:HGNC Symbol;Acc:668] zzz999 83443 SF3B5 splicing factor 3b, subunit 5, 10kDa [Source:HGNC Symbol;Acc:21083] zzz999 23024 PDZRN3 PDZ domain containing ring finger 3 [Source:HGNC Symbol;Acc:17704] P T 7832 BTG2 BTG family, member 2 [Source:HGNC Symbol;Acc:1131] T 56521 DNAJC12 DnaJ (Hsp40) homolog, subfamily C, member 12 [Source:HGNC Symbol;Acc:28908] zzz999 8036 SHOC2 soc-2 suppressor of clear homolog (C. elegans) [Source:HGNC Symbol;Acc:15454] P T 51186 WBP5 WW domain binding protein 5 [Source:HGNC Symbol;Acc:30084] zzz999 1153 CIRBP cold inducible RNA binding protein [Source:HGNC Symbol;Acc:1982] zzz999 5048 PAFAH1B1 platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa) [Source:HGNC Symbol;Acc:8574] zzz999 23479 ISCU iron-sulfur cluster scaffold homolog (E. coli) [Source:HGNC Symbol;Acc:29882] zzz999 6605 SMARCE1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 [Source:HGNC Symbol;Acc:11109] P T 9314 KLF4 Kruppel-like factor 4 (gut) [Source:HGNC Symbol;Acc:6348] P T 57406 ABHD6 abhydrolase domain containing 6 [Source:HGNC Symbol;Acc:21398] zzz999 1454 CSNK1E casein kinase 1, epsilon [Source:HGNC Symbol;Acc:2453] zzz999 51302 CYP39A1 cytochrome P450, family 39, subfamily A, polypeptide 1 [Source:HGNC Symbol;Acc:17449] zzz999 25814 ATXN10 ataxin 10 [Source:HGNC Symbol;Acc:10549] zzz999 10560 SLC19A2 solute carrier family 19 (thiamine transporter), member 2 [Source:HGNC Symbol;Acc:10938] zzz999 54806 AHI1 Abelson helper integration site 1 [Source:HGNC Symbol;Acc:21575] zzz999 3569 IL6 interleukin 6 (interferon, beta 2) [Source:HGNC Symbol;Acc:6018] zzz999 7461 CLIP2 CAP-GLY domain containing linker protein 2 [Source:HGNC Symbol;Acc:2586] zzz999 57466 SCAF4 SR-related CTD-associated factor 4 [Source:HGNC Symbol;Acc:19304] zzz999 6926 TBX3 T-box 3 [Source:HGNC Symbol;Acc:11602] zzz999 4675 NAP1L3 nucleosome assembly protein 1-like 3 [Source:HGNC Symbol;Acc:7639] zzz999 440093 H3F3C H3 histone, family 3C [Source:HGNC Symbol;Acc:33164] P T 4126 MANBA mannosidase, beta A, lysosomal [Source:HGNC Symbol;Acc:6831] zzz999 56898 BDH2 3-hydroxybutyrate dehydrogenase, type 2 [Source:HGNC Symbol;Acc:32389] T 546 ATRX alpha thalassemia/mental retardation syndrome X-linked [Source:HGNC Symbol;Acc:886] P T 55190 NUDT11 nudix (nucleoside diphosphate linked moiety X)-type motif 11 [Source:HGNC Symbol;Acc:18011] P T 8504 PEX3 peroxisomal biogenesis factor 3 [Source:HGNC Symbol;Acc:8858] T 162494 RHBDL3 rhomboid, veinlet-like 3 (Drosophila) [Source:HGNC Symbol;Acc:16502] zzz999 79147 FKRP fukutin related protein [Source:HGNC Symbol;Acc:17997] zzz999 6143 RPL19 ribosomal protein L19 [Source:HGNC Symbol;Acc:10312] zzz999 7803 PTP4A1 protein tyrosine phosphatase type IVA, member 1 [Source:HGNC Symbol;Acc:9634] T 7786 MAP3K12 mitogen-activated protein kinase kinase kinase 12 [Source:HGNC Symbol;Acc:6851] zzz999 94104 GCFC1 GC-rich sequence DNA-binding factor 1 [Source:HGNC Symbol;Acc:13579] P T 51043 ZBTB7B zinc finger and BTB domain containing 7B [Source:HGNC Symbol;Acc:18668] zzz999 9520 NPEPPS aminopeptidase puromycin sensitive [Source:HGNC Symbol;Acc:7900] zzz999 8532 CPZ carboxypeptidase Z [Source:HGNC Symbol;Acc:2333] zzz999 22877 MLXIP MLX interacting protein [Source:HGNC Symbol;Acc:17055] zzz999 10425 ARIH2 ariadne homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:690] zzz999 3981 LIG4 ligase IV, DNA, ATP-dependent [Source:HGNC Symbol;Acc:6601] zzz999 55692 LUC7L LUC7-like (S. cerevisiae) [Source:HGNC Symbol;Acc:6723] zzz999 5701 PSMC2 proteasome (prosome, macropain) 26S subunit, ATPase, 2 [Source:HGNC Symbol;Acc:9548] zzz999 2006 ELN elastin [Source:HGNC Symbol;Acc:3327] zzz999 55857 zzz999 zzz999 zzz999 4048 LTA4H leukotriene A4 hydrolase [Source:HGNC Symbol;Acc:6710] zzz999 403 ARL3 ADP-ribosylation factor-like 3 [Source:HGNC Symbol;Acc:694] T 6879 TAF7 TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 55kDa [Source:HGNC Symbol;Acc:11541] zzz999 9765 ZFYVE16 zinc finger, FYVE domain containing 16 [Source:HGNC Symbol;Acc:20756] T 5824 PEX19 peroxisomal biogenesis factor 19 [Source:HGNC Symbol;Acc:9713] zzz999 10962 MLLT11 myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 11 [Source:HGNC Symbol;Acc:16997] zzz999 56985 C17orf48 chromosome 17 open reading frame 48 [Source:HGNC Symbol;Acc:30925] zzz999 1831 TSC22D3 TSC22 domain family, member 3 [Source:HGNC Symbol;Acc:3051] zzz999 22873 DZIP1 DAZ interacting protein 1 [Source:HGNC Symbol;Acc:20908] T 8912 CACNA1H calcium channel, voltage-dependent, T type, alpha 1H subunit [Source:HGNC Symbol;Acc:1395] zzz999 2549 GAB1 GRB2-associated binding protein 1 [Source:HGNC Symbol;Acc:4066] T 2353 FOS FBJ murine osteosarcoma viral oncogene homolog [Source:HGNC Symbol;Acc:3796] zzz999 444 ASPH aspartate beta-hydroxylase [Source:HGNC Symbol;Acc:757] zzz999 8642 DCHS1 dachsous 1 (Drosophila) [Source:HGNC Symbol;Acc:13681] zzz999 11108 PRDM4 PR domain containing 4 [Source:HGNC Symbol;Acc:9348] zzz999 384 ARG2 arginase, type II [Source:HGNC Symbol;Acc:664] zzz999 23111 SPG20 spastic paraplegia 20 (Troyer syndrome) [Source:HGNC Symbol;Acc:18514] zzz999 26118 WSB1 WD repeat and SOCS box containing 1 [Source:HGNC Symbol;Acc:19221] zzz999 5921 RASA1 RAS p21 protein activator (GTPase activating protein) 1 [Source:HGNC Symbol;Acc:9871] P T 27101 CACYBP calcyclin binding protein [Source:HGNC Symbol;Acc:30423] T 10090 UST uronyl-2-sulfotransferase [Source:HGNC Symbol;Acc:17223] T 7539 ZFP37 zinc finger protein 37 homolog (mouse) [Source:HGNC Symbol;Acc:12863] zzz999 6767 ST13 suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) [Source:HGNC Symbol;Acc:11343] zzz999 8493 PPM1D protein phosphatase, Mg2+/Mn2+ dependent, 1D [Source:HGNC Symbol;Acc:9277] zzz999 6993 DYNLT1 dynein, light chain, Tctex-type 1 [Source:HGNC Symbol;Acc:11697] P T

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.